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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST003932
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATNTAAGTCATTCTAGCATTT
miRNA*
ATACTAGAATGACCTTATATTG
mismatches:
2
bulges:
1
View larger
pre-miRNA
ATAAAATGNTTGCTGATTAATTNGTACTCCCTCCTTTCACA
ATNTAAGTCATTCTAGCATTT
TCCNTATTTATATTGATGTTGATGATTCATCAACATCA
ATATAAATATGGAAA
ATACTAGAATGACCTTATATTG
TGAAACGAAGGAAGTATATATGATCTNCCCGGTACATT
dot-bracket secondary structure
....((((.(((..(((((.(..(((((((.((.(((((((
((.(((((((((((((.((((
(((.((((((((((((((((((((...)))))))))))
))))))))).)))))
)).))))))))).)))).))))
))))).)).)).)))))..))))))....)))..))))
SIMILARITIES
miRBase
osa-MIR809d
:
0.0000000000006
PMRD
osa-miR809d
:
0.0000000000006
microPC
miR809
:
0.000000009
UniProt
no hits
RFAM
MIR1122: 1e-26
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record